%%%%%%%%% \iffalse meta-comment % % Copyright (C) 2018 by Jeffrey B. Arnold % --------------------------------------------------------------------------- % This work may be distributed and/or modified under the % conditions of the LaTeX Project Public License, either version 1.3 % of this license or (at your option) any later version. % The latest version of this license is in % http://www.latex-project.org/lppl.txt % and version 1.3 or later is part of all distributions of LaTeX % version 2005/12/01 or later. % % This work has the LPPL maintenance status `maintained'. % % The Current Maintainer of this work is Jeffrey B. Arnold. % % This work consists of the files lstbayes.dtx and lstbayes.ins % and the derived filebase lstbayes.sty. % % \fi % % \iffalse %<*driver> \ProvidesFile{lstbayes.dtx} % %\NeedsTeXFormat{LaTeX2e}[1999/12/01] %\ProvidesPackage{lstbayes} %<*package> [2018/07/06 lstbayes listings language drivers for BUGS, JAGS, and Stan] % % %<*driver> \documentclass{ltxdoc} \usepackage{lstbayes} \usepackage{hyperref} \EnableCrossrefs \CodelineIndex \RecordChanges \begin{document} \DocInput{lstbayes.dtx} \PrintChanges \PrintIndex \end{document} % % \fi % % \CheckSum{12} % % \CharacterTable % {Upper-case \A\B\C\D\E\F\G\H\I\J\K\L\M\N\O\P\Q\R\S\T\U\V\W\X\Y\Z % Lower-case \a\b\c\d\e\f\g\h\i\j\k\l\m\n\o\p\q\r\s\t\u\v\w\x\y\z % Digits \0\1\2\3\4\5\6\7\8\9 % Exclamation \! Double quote \" Hash (number) \# % Dollar \$ Percent \% Ampersand \& % Acute accent \' Left paren $ Right paren $ % Asterisk \* Plus \+ Comma \, % Minus \- Point \. Solidus \/ % Colon \: Semicolon \; Less than \< % Equals \= Greater than \> Question mark \? % Commercial at \@ Left bracket \[ Backslash \\ % Right bracket \] Circumflex \^ Underscore \_ % Grave accent \` Left brace \{ Vertical bar \| % Right brace \} Tilde \~} % % % \changes{2015-09-26}{2015/09/26}{Converted to DTX file} % \changes{2015-09-27}{2015/09/27}{Fix README} % \changes{2015-09-28}{2015/09/27}{Fix README. Add keywords for all built-in functions that are in Stan v2.8.0.} % % \DoNotIndex{\newcommand,\newenvironment} % % \providecommand*{\url}{\texttt} % \GetFileInfo{lstbayes.dtx} % \title{The \textsf{lstbayes} package} % \author{Jeffrey B. Arnold \\ \url{jeffrey.arnold@gmail.com}} % \date{\fileversion~from \filedate} % % \maketitle % % \section{Introduction} % % This package provides language drivers for the \href{https://www.ctan.org/tex-archive/macros/latex/contrib/listings/}{\textsf{listings}} package for the several Bayesian modeling languages: BUGS, JAGS, and Stan. % % \section{Usage} % % % See the documentation of the \textsf{listings} package. % % % \StopEventually{} % % \section{Implementation} % % \iffalse %<*package> % \fi % % \begin{macrocode} \RequirePackage{listings} % \end{macrocode} % % \subsection{BUGS} % % Language driver for BUGS, including \href{http://www.openbugs.net/w/FrontPage}{WinBUGS} and \href{http://openbugs.net}{OpenBUGS}. % The driver is based on \href{http://www.openbugs.net/Manuals/Manual.html}{OpenBUGS v. 3.2.3}. % % \begin{macrocode} \lstdefinelanguage{BUGS}{ morekeywords=[1]{for,in,model,T,I,C},% morecomment=[l]{\#},% sensitive=true,% alsoletter={.},% otherkeywords={<-,~},% literate={<-}{{$\leftarrow$}}1 {~}{{$\sim$}}1% } \lstalias[]{OpenBUGS}[]{BUGS} \lstalias[]{WinBUGS}[]{BUGS} % \end{macrocode} % % \subsection{JAGS} % % Language driver for \href{http://mcmc-jags.sourceforge.net/}{JAGS}. % The driver is based on JAGS version 3.4.0 (Sept 4, 2013). % % % \begin{macrocode} \lstdefinelanguage[]{JAGS}[]{BUGS}{ morekeywords=[1]{data,var,const},% morecomment=[n]{/*}{*/}% } % \end{macrocode} % % \subsection{Stan} % % Language driver for \href{http://mc-stan.org/}{Stan}. % The driver is based on Stan modeling language version \href{https://github.com/stan-dev/stan/releases/download/v2.17.0/stan-reference-2.17.0.pdf}{2.17.0}. % % \begin{macrocode} \lstdefinelanguage{Stan}{ morekeywords=[1]{% functions,% data,% else,% for,% generated,% if,% in,% increment_log_prob,% integrate_ode_bdf,% integrate_ode_rk45,% integrate_ode,% lower,% model,% parameters,% print,% quantities,% reject,% return,% T,% target,% transformed,% upper,% while% },% morekeywords=[2]{% cholesky_factor_corr,% cholesky_factor_cov,% corr_matrix,% cov_matrix,% int,% matrix,% ordered,% positive_ordered,% real,% row_vector,% simplex,% unit_vector,% vector,% void% },% morekeywords=[3]{% Phi,% Phi_approx,% abs,% acos,% acosh,% algebra_solver,% append_array,% append_col,% append_row,% asin,% asinh,% atan,% atan2,% atanh,% bernoulli,% bernoulli_cdf,% bernoulli_lccdf,% bernoulli_lcdf,% bernoulli_logit,% bernoulli_logit_lpmf,% bernoulli_logit_rng,% bernoulli_lpmf,% bernoulli_rng,% bessel_first_kind,% bessel_second_kind,% beta,% beta_binomial,% beta_binomial_cdf,% beta_binomial_lccdf,% beta_binomial_lcdf,% beta_binomial_lpmf,% beta_binomial_rng,% beta_cdf,% beta_lccdf,% beta_lcdf,% beta_lpdf,% beta_rng,% binary_log_loss,% binomial,% binomial_cdf,% binomial_coefficient_log,% binomial_lccdf,% binomial_lcdf,% binomial_logit,% binomial_logit_lpmf,% binomial_lpmf,% binomial_rng,% block,% categorical,% categorical_logit,% categorical_logit_lpmf,% categorical_logit_rng,% categorical_lpmf,% categorical_rng,% cauchy,% cauchy_cdf,% cauchy_lccdf,% cauchy_lcdf,% cauchy_lpdf,% cauchy_rng,% cbrt,% ceil,% chi_square,% chi_square_cdf,% chi_square_lccdf,% chi_square_lcdf,% chi_square_lpdf,% chi_square_rng,% cholesky_decompose,% choose,% col,% cols,% columns_dot_product,% columns_dot_self,% cos,% cosh,% cov_exp_quad,% crossprod,% csr_extract_u,% csr_extract_v,% csr_extract_w,% csr_matrix_times_vector,% csr_to_dense_matrix,% cumulative_sum,% determinant,% diag_matrix,% diag_post_multiply,% diag_pre_multiply,% diagonal,% digamma,% dims,% dirichlet,% dirichlet_lpdf,% dirichlet_rng,% distance,% dot_product,% dot_self,% double_exponential,% double_exponential_cdf,% double_exponential_lccdf,% double_exponential_lcdf,% double_exponential_lpdf,% double_exponential_rng,% e,% eigenvalues_sym,% eigenvectors_sym,% erf,% erfc,% exp,% exp2,% exp_mod_normal,% exp_mod_normal_cdf,% exp_mod_normal_lccdf,% exp_mod_normal_lcdf,% exp_mod_normal_lpdf,% exp_mod_normal_rng,% expm1,% exponential,% exponential_cdf,% exponential_lccdf,% exponential_lcdf,% exponential_lpdf,% exponential_rng,% fabs,% falling_factorial,% fdim,% floor,% fma,% fmax,% fmin,% fmod,% frechet,% frechet_cdf,% frechet_lccdf,% frechet_lcdf,% frechet_lpdf,% frechet_rng,% gamma,% gamma_cdf,% gamma_lccdf,% gamma_lcdf,% gamma_lpdf,% gamma_p,% gamma_q,% gamma_rng,% gaussian_dlm_obs,% gaussian_dlm_obs_lpdf,% get_lp,% gumbel,% gumbel_cdf,% gumbel_lccdf,% gumbel_lcdf,% gumbel_lpdf,% gumbel_rng,% head,% hypergeometric,% hypergeometric_lpmf,% hypergeometric_rng,% hypot,% inc_beta,% int_step,% integrate_ode,% integrate_ode_bdf,% integrate_ode_rk45,% inv,% inv_Phi,% inv_chi_square,% inv_chi_square_cdf,% inv_chi_square_lccdf,% inv_chi_square_lcdf,% inv_chi_square_lpdf,% inv_chi_square_rng,% inv_cloglog,% inv_gamma,% inv_gamma_cdf,% inv_gamma_lccdf,% inv_gamma_lcdf,% inv_gamma_lpdf,% inv_gamma_rng,% inv_logit,% inv_sqrt,% inv_square,% inv_wishart,% inv_wishart_lpdf,% inv_wishart_rng,% inverse,% inverse_spd,% is_inf,% is_nan,% lbeta,% lchoose,% lgamma,% lkj_corr,% lkj_corr_cholesky,% lkj_corr_cholesky_lpdf,% lkj_corr_cholesky_rng,% lkj_corr_lpdf,% lkj_corr_rng,% lmgamma,% lmultiply,% log,% log10,% log1m,% log1m_exp,% log1m_inv_logit,% log1p,% log1p_exp,% log2,% log_determinant,% log_diff_exp,% log_falling_factorial,% log_inv_logit,% log_mix,% log_rising_factorial,% log_softmax,% log_sum_exp,% logistic,% logistic_cdf,% logistic_lccdf,% logistic_lcdf,% logistic_lpdf,% logistic_rng,% logit,% lognormal,% lognormal_cdf,% lognormal_lccdf,% lognormal_lcdf,% lognormal_lpdf,% lognormal_rng,% machine_precision,% matrix_exp,% max,% mdivide_left_spd,% mdivide_left_tri_low,% mdivide_right_spd,% mdivide_right_tri_low,% mean,% min,% modified_bessel_first_kind,% modified_bessel_second_kind,% multi_gp,% multi_gp_cholesky,% multi_gp_cholesky_lpdf,% multi_gp_lpdf,% multi_normal,% multi_normal_cholesky,% multi_normal_cholesky_lpdf,% multi_normal_cholesky_rng,% multi_normal_lpdf,% multi_normal_prec,% multi_normal_prec_lpdf,% multi_normal_rng,% multi_student_t,% multi_student_t_lpdf,% multi_student_t_rng,% multinomial,% multinomial_lpmf,% multinomial_rng,% multiply_log,% multiply_lower_tri_self_transpose,% neg_binomial,% neg_binomial_2,% neg_binomial_2_cdf,% neg_binomial_2_lccdf,% neg_binomial_2_lcdf,% neg_binomial_2_log,% neg_binomial_2_log_lpmf,% neg_binomial_2_log_rng,% neg_binomial_2_lpmf,% neg_binomial_2_rng,% neg_binomial_cdf,% neg_binomial_lccdf,% neg_binomial_lcdf,% neg_binomial_lpmf,% neg_binomial_rng,% negative_infinity,% normal,% normal_cdf,% normal_lccdf,% normal_lcdf,% normal_lpdf,% normal_rng,% not_a_number,% num_elements,% ordered_logistic,% ordered_logistic_lpmf,% ordered_logistic_rng,% owens_t,% pareto,% pareto_cdf,% pareto_lccdf,% pareto_lcdf,% pareto_lpdf,% pareto_rng,% pareto_type_2,% pareto_type_2_cdf,% pareto_type_2_lccdf,% pareto_type_2_lcdf,% pareto_type_2_lpdf,% pareto_type_2_rng,% pi,% poisson,% poisson_cdf,% poisson_lccdf,% poisson_lcdf,% poisson_log,% poisson_log_lpmf,% poisson_log_rng,% poisson_lpmf,% poisson_rng,% positive_infinity,% pow,% print,% prod,% qr_Q,% qr_R,% quad_form,% quad_form_diag,% quad_form_sym,% rank,% rayleigh,% rayleigh_cdf,% rayleigh_lccdf,% rayleigh_lcdf,% rayleigh_lpdf,% rayleigh_rng,% reject,% rep_array,% rep_matrix,% rep_row_vector,% rep_vector,% rising_factorial,% round,% row,% rows,% rows_dot_product,% rows_dot_self,% scaled_inv_chi_square,% scaled_inv_chi_square_cdf,% scaled_inv_chi_square_lccdf,% scaled_inv_chi_square_lcdf,% scaled_inv_chi_square_lpdf,% scaled_inv_chi_square_rng,% sd,% segment,% sin,% singular_values,% sinh,% size,% skew_normal,% skew_normal_cdf,% skew_normal_lccdf,% skew_normal_lcdf,% skew_normal_lpdf,% skew_normal_rng,% softmax,% sort_asc,% sort_desc,% sort_indices_asc,% sort_indices_desc,% sqrt,% sqrt2,% square,% squared_distance,% step,% student_t,% student_t_cdf,% student_t_lccdf,% student_t_lcdf,% student_t_lpdf,% student_t_rng,% sub_col,% sub_row,% sum,% tail,% tan,% tanh,% target,% tcrossprod,% tgamma,% to_array_1d,% to_array_2d,% to_matrix,% to_row_vector,% to_vector,% trace,% trace_gen_quad_form,% trace_quad_form,% trigamma,% trunc,% uniform,% uniform_cdf,% uniform_lccdf,% uniform_lcdf,% uniform_lpdf,% uniform_rng,% variance,% von_mises,% von_mises_lpdf,% von_mises_rng,% weibull,% weibull_cdf,% weibull_lccdf,% weibull_lcdf,% weibull_lpdf,% weibull_rng,% wiener,% wiener_lpdf,% wishart,% wishart_lpdf,% wishart_rng },% otherkeywords={.*=,./=,+=,-=,*=,/=,<-,~},% sensitive=true,% morecomment=[l]{\#},% morecomment=[l]{//},% morecomment=[n]{/*}{*/},% string=[d]"%, literate={<-}{{$\leftarrow$}}1 {~}{{$\sim$}}1% } % \end{macrocode} % % \iffalse % % \fi % % \Finale